BoolDoG
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booldog package
BoolDoG
»
Index
Index
A
|
B
|
C
|
D
|
E
|
G
|
H
|
I
|
M
|
N
|
O
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P
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R
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S
|
T
|
U
A
Act (booldog.ode.SquadODE attribute)
B
BoolCubeODE (class in booldog.ode)
booldog
module
booldog.base
module
booldog.bool_graph
module
booldog.ode
module
boolean_simulation() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
BooleanGraph (class in booldog.bool_graph)
C
continuous_simulation() (booldog.RegulatoryNetwork method)
D
dxdt (booldog.ode.BoolCubeODE attribute)
(booldog.ode.SquadODE attribute)
E
event_function() (booldog.ode.ODE method)
G
generate_states() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
get_interactions() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
get_parents() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
H
hill() (booldog.ode.BoolCubeODE method)
(booldog.ode.ODE method)
homologue_b1() (booldog.ode.BoolCubeODE method)
(booldog.ode.ODE method)
I
identity() (booldog.ode.BoolCubeODE method)
(booldog.ode.ODE method)
index (booldog.bool_graph.BooleanGraph attribute)
Inh (booldog.ode.SquadODE attribute)
M
module
booldog
booldog.base
booldog.bool_graph
booldog.ode
N
n (booldog.bool_graph.BooleanGraph attribute)
nodes (booldog.bool_graph.BooleanGraph attribute)
normalised_hill() (booldog.ode.BoolCubeODE method)
(booldog.ode.ODE method)
O
ODE (class in booldog.ode)
ODE_factory() (in module booldog)
(in module booldog.ode)
ode_parent_classes (in module booldog.ode)
P
param_dict (booldog.ode.BoolCubeODE attribute)
param_gamma (booldog.ode.SquadODE attribute)
param_h (booldog.ode.SquadODE attribute)
param_k (booldog.ode.BoolCubeODE attribute)
param_n (booldog.ode.BoolCubeODE attribute)
param_tau (booldog.ode.BoolCubeODE attribute)
plot_boolean_simulation() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
plot_simulation() (booldog.RegulatoryNetwork method)
plot_state_transitions() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
primes (booldog.bool_graph.BooleanGraph attribute)
primes_to_matrices() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
R
RacipeODE (class in booldog.ode)
RegulatoryNetwork (class in booldog)
S
ShaoODE (class in booldog.ode)
SquadODE (class in booldog.ode)
steady_states() (booldog.bool_graph.BooleanGraph method)
(booldog.RegulatoryNetwork method)
T
terminal (booldog.ode.ODE attribute)
transform_bool_to_continuous() (booldog.RegulatoryNetwork method)
transforms (in module booldog.ode)
U
update() (booldog.ode.ODE method)