booldog.io.networkx

Function to transform booldog:BoolDogModel to networkx:DiGraph

Attributes

logger

Functions

booldog2networkx(model[, as_logic_circuit])

Export a BoolDog Boolean model to Networkx DiGraph

Module Contents

booldog.io.networkx.logger
booldog.io.networkx.booldog2networkx(model, as_logic_circuit=True)

Export a BoolDog Boolean model to Networkx DiGraph

Parameters:

  • model (booldog:BoolDogModel) – A BoolDog object representing a Boolean network.

  • as_logic_circuit (bool) – If True, the graph is exported as a logic circuit (Boolean rules are represented as “logical” nodes (and, or, not) and edges. Otherwise, it is exported as a directed interaction graph. Default is False.

Returns:

graph – A networkx graph with the same nodes as the input network. If as_logic_circuit is True, Boolean rules are represented as “logical” nodes (and, or, not) and edges.

Return type:

networkx.DiGraph

Notes

See also pyboolnet.interaction_graphs.primes2igraph.